PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 61429
Common NameMICPUN_61429
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family SBP
Protein Properties Length: 1037aa    MW: 104530 Da    PI: 5.4359
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
61429genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP34.45.7e-11599675176
            --SSTT-----TT--HHHHHTT.--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
    SBP   1 lCqvegCeadlseakeyhrrhk.vCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
            +C v++C +  ++  e ++r    C+ hs a vvl  g+  r Cq C  fh ++ fD + ++C +rL +   r r k
  61429 599 CCLVDDCFTPRKQPSEQNSRMPlTCKEHSGALVVLYGGVASRECQACRTFHPITAFDRDNKTCETRLLRKKLRYRAK 675
            599999998888887777776526*******************************************9998887765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.9E-13593662IPR004333Transcription factor, SBP-box
PROSITE profilePS5114114.238597675IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-10598677IPR004333Transcription factor, SBP-box
PfamPF031101.0E-17600674IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1037 aa     Download sequence    Send to blast
MFAPGFSAHA SVESGQAHCG ARAGSSSGGE ERINPFDMPG ENSPPSKKAR RGSPVLPVDA  60
DLDGVLHDQE EDDRQPSPPH PSTGKRVIWR VPETSHTGSC WQIIDGFATP EECRALVADA  120
KQGLADSLRQ PLRRFEDPPL VGVKYRSADA SSLASEALAA LSARAANVTC VGVNKEKDSV  180
MIAHTSARVT TTTRAAVLPG DEKDENADVG KEPGAAEGDG VGAAREGSVD SEGFLLREDH  240
AKDGGVSRWA RLVNVHHDHN RDELRACTVF VYLSDVEPIT GPADDADGTE RRKTPGGGTF  300
FPCVMGDVDP REGDDLRARL ALHGKRGTNV IFHDSRDGGA EEEASEGDAL VAEFGTLSRG  360
GVGVVGVSGG AGAGAEAGAG YDDEGMTETM AECEARYAAV CASGRHPLRG ECPESMRGTI  420
LEGNGVPGLL IRPREGRAVV FWHGEDAGSC PEAWHAPTCV EEGSSDKWLV TFFKVPLGAK  480
PKLKQATEET IMPGGLDPYA AVMAASRGTL DSVNMVNIHG TQMIQPVRKN DDATTAAAME  540
KIGRSPGVEV GNLPGSELPA QLGPGSEPAR AQGNALTGLP GLSNNVPGKS LSQWKQKWCC  600
LVDDCFTPRK QPSEQNSRMP LTCKEHSGAL VVLYGGVASR ECQACRTFHP ITAFDRDNKT  660
CETRLLRKKL RYRAKTMQRR GSMQPENLTY PAGAHPYPAG AYPYPAAVPG HVGVQPGAQF  720
APGAHPLLIP DANQTALLLA AASQQRNHQQ QQLNSMLPFG GPPGGPASSG HPGATGAGAQ  780
PSIDALGALG ATGLDPWNLA QYAALVQAGA GSGSASASAQ APAGLTGTGL ASAGQDQTQA  840
YLAALQQANS LSGLGGGLGG GLGGLGGLGG LGGLGGLGGL GGLGGLGGLG GLGGLGGLGG  900
LGGLGGLGGG FGLGGVGGGV GGGVGGGLGG LGAVGGLGGL GAMGGLGGLG GLGGLGDLGD  960
SAHLLAQLRQ QVGDNATAAA SAAAMNQAGA SYPGVSSELA EILRNVDPQA LPAVLAQLQQ  1020
ATSGLNGGTD TGGGGQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1666672RKKLRYR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013290.0CP001329.1 Micromonas sp. RCC299 chromosome 9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002504650.10.0predicted protein
TrEMBLC1ECI40.0C1ECI4_MICSR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1069424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.13e-07squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]